PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.058440.1
Common NameCsa_4G618450, LOC101220527
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family FAR1
Protein Properties Length: 760aa    MW: 87822 Da    PI: 8.2459
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.058440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.82.1e-2493179191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY+eYA++vGF +++++s++sk++g++++ +  Cs+ g+++e++++     ++r+  +tgC+a++++kk++dgkw v+ +  eHnHe++p
  Cucsa.058440.1  93 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESTTT----VNPRPCMKTGCNASMHIKKREDGKWFVHGFTREHNHEICP 179
                     5****************************************998877....9************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-2293179IPR004330FAR1 DNA binding domain
PfamPF105518.6E-23261354IPR018289MULE transposase domain
PROSITE profilePS509669.062541577IPR007527Zinc finger, SWIM-type
PfamPF044343.4E-6543574IPR007527Zinc finger, SWIM-type
SMARTSM005759.9E-7552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MDIDLELPSS DHERLDVIQG RNDGVNVCQA NGQGKYANSF ARAEHHEEMS IPNAKKSSGE  60
DRMDIINFET DFRIGPFEPK NGLEFESKEE AYSFYREYAR SVGFGITIKA SRRSKKSGKF  120
IDIKIACSRF GSKRESTTTV NPRPCMKTGC NASMHIKKRE DGKWFVHGFT REHNHEICPD  180
DFHHAMKGRN KKPDIAISEK KGLQLALDEG DVLLMLEHFV HMQETNPNFF YAIHFNQEKQ  240
LRNVLWVDAK ARHDYQNFSD VIFFDTYYLT NGYKVPFVPI VGVNHHFQYI LFGGALIGDM  300
ATSSFIWLMK TWLKAVGGRA PRVVLTDQEL SLKESVSDVF PNTLHLFSLW HILRRVPEKL  360
GRTINQNGGF IETLNKCIYR SWTDKEFEKR WWEMIDKFQI REDEWLQLLF DDRKKWVPTY  420
VKNYFLAGMS TLERSGSVIS FFDKYICKET SFKEFIKHSK IFFKDMLELE ANADFETRHQ  480
KPILKSLFTF EKQMATMYTT TMFKKFQLQI LGAASCQVHK QTENGATVTY HIHDLEEHQD  540
FLVAWNKTEM DICCLCRSFE YQGILCRHAI LVFQILGLTS IPHKYILKRW TRSAKVRISE  600
SSNRLHYRVQ RFNNLCKQAI KLGELGSLSQ ETYDIASEAF DEVLKQCAFA KNSTKSFVEI  660
NTLGSVGFVD DEENHGEYMA KSSGKRQMSK KGKVIKQARY KSSEVVLQGQ SNTNSRFCDG  720
PEDYYSHQAM HNLDYSPSVV AHVGPCSDGQ TMQSQGQLH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818640.0LN681864.1 Cucumis melo genomic scaffold, anchoredscaffold00092.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145997.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 2
RefseqXP_011654002.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2
SwissprotQ3EBQ30.0FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBLA0A0A0KZ940.0A0A0A0KZ94_CUCSA; Uncharacterized protein
STRINGVIT_03s0017g01830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.30.0FAR1-related sequence 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]